PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0566s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18154.8 Da PI: 6.7426 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 6.6e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+ slvyeA+ar+rdPvyG+vg i+ lq+q+ SapurV1A.0566s0080.1.p 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQEIPVHQRADAVGSLVYEANARMRDPVYGSVGAISYLQNQV 92 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 +ql+ ela++++e SapurV1A.0566s0080.1.p 93 SQLQMELAVAQAE 105 *********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.691 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK IFGASNVSKM LQEIPVHQRA 60 DAVGSLVYEA NARMRDPVYG SVGAISYLQN QVSQLQMELA VAQAEILCIQ MQQEPNLPIQ 120 LDQDEKSLLL ASCNNFTSIP QYFNFASSSN VIQDPLKRES LWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 2 | 119 | 7 | 128 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 2 | 119 | 7 | 128 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0566s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298499.1 | 1e-114 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 1e-81 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | B9GH62 | 1e-113 | B9GH62_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s28840.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-84 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0566s0080.1.p |
Publications ? help Back to Top | |||
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