PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0563s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92299.4 Da    PI: 6.1794
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0563s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0563s0010.1.p 16 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 74
                            6789*****************************************************97 PP
2START170.11.5e-531653722204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  ++   v+e+l+d++ W ++++  +++ vi +g
  SapurV1A.0563s0010.1.p 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPI-KVAEILKDRPSWFRDCRCLDIMSVIPTG 250
                             7899******************************************************.8888888888****************** PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+    ss+vRa +lpSg+li+p+++g+s +++v+h
  SapurV1A.0563s0010.1.p 251 sgGTIELIYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTASTGGPTgppPSSFVRADMLPSGYLIRPCEGGGSIIHIVDH 337
                             ***********************************************99998888899***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                             vdl+ ++++++lr+l++s+ + ++k++va+l++ +
  SapurV1A.0563s0010.1.p 338 VDLDVWSVPEVLRPLYESSKILAQKMTVAALRHIR 372
                             *******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611175IPR001356Homeobox domain
SMARTSM003898.8E-151379IPR001356Homeobox domain
SuperFamilySSF466894.28E-161678IPR009057Homeodomain-like
CDDcd000864.03E-161676No hitNo description
PfamPF000465.0E-161674IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-181874IPR009057Homeodomain-like
CDDcd146862.36E-668107No hitNo description
PROSITE profilePS5084825.633155383IPR002913START domain
CDDcd088751.47E-72159375No hitNo description
SMARTSM002343.0E-50164374IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-20164369IPR023393START-like domain
SuperFamilySSF559618.79E-38164376No hitNo description
PfamPF018523.8E-51165372IPR002913START domain
SuperFamilySSF559614.4E-5402491No hitNo description
SuperFamilySSF559614.4E-5524597No hitNo description
PfamPF086705.6E-50697841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MALSMHSKDK QMDSSKYVRY TPEQVEALER VYTECPKPSS LRRQQLIREC PILCNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND RLQKQVSHLV YENGYMRQQV  120
HTASATTTDN SCESVVMSGQ HQQQQNPTPL QPQRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PIKVAEILKD RPSWFRDCRC  240
LDIMSVIPTG SGGTIELIYM QTYAPTTLAA ARDFWTLRYT TTLEDGSLVI CERSLTASTG  300
GPTGPPPSSF VRADMLPSGY LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKMTVAALRH IRQIAQETTG EIQYGGGRQP AVLRTFSQRL SRGFNEAVNG FTDSGWSLLD  420
GDGGDDVTIV INSSPAKFLG SQYNASMSPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDVY SAACLKASPY AVPCARPGGF PSSQVNLPLA HTVEHEEFLE VVRLEGHAFS  540
PDVALARDMY LLQLCSGVDE NAVGACAQLI FAPIDESFAD DAPLLPSGFR VIPLDPKTDA  600
PAATRTLDLA STLEVGGGGA RPPSEADTNS YNLRSVLTIA FQFTFESHFQ DNVAAMARQY  660
VRGVVGSVQR VAMAIAPSPP SSNMGPKSLP GSPEALTLAQ WICRSYRIHT GGELFRVDSQ  720
AGDALLKRLW HHSDAIMCCS LKANESPVFT FANQAGLDML ETTLVALQDI MLDKILDEAG  780
RKILCSEFSK IMQQGFAHLP AGICVSSMGR LVSYEQAIAW KVLDDDDSNH CLTFMFINWS  840
FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0563s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196180.0AY919618.1 Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012083.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A2K1YI100.0A0A2K1YI10_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]