PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0560s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 21280.2 Da PI: 10.0521 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.8e-11 | 62 | 173 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHH CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFv 69 +k+++psd ++++rl +p +e+h +++++++ ++++ d +g + ++ + + +s++y++ +GW k+Fv SapurV1A.0560s0050.1.p 62 KKKMKPSDLGNLCRLLVPSYLVEKHilpflnttqanqvagvvSQETNRGLKVRVWDmNTGSTHQLVFERWSTSRSYIFNDGWtKDFV 148 699*************************99999888887777555567778888887778888888888*************557** PP HHHT--TT-EEEEEE-SS.SEE..E CS B3 70 kangLkegDfvvFkldgr.sefelv 93 k +L egD + ++ d++ s+f++ SapurV1A.0560s0050.1.p 149 KRRNLAEGDEIGIYWDKDqSRFTFS 173 **************99877777443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-18 | 59 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-16 | 59 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.69E-16 | 59 | 174 | No hit | No description |
SMART | SM01019 | 0.0047 | 61 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-8 | 63 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEKHGWIQSR NKESVEELDR SRVTFNLRRM TTSYTMGDLL EERSRGVSTE LSLSHYHPFT 60 IKKKMKPSDL GNLCRLLVPS YLVEKHILPF LNTTQANQVA GVVSQETNRG LKVRVWDMNT 120 GSTHQLVFER WSTSRSYIFN DGWTKDFVKR RNLAEGDEIG IYWDKDQSRF TFSVPSRTCL 180 VR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0560s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035168.1 | 4e-94 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | B9H2Z8 | 4e-92 | B9H2Z8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s09870.1 | 6e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF579 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 1e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0560s0050.1.p |