PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0558s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 333aa    MW: 36658.4 Da    PI: 5.255
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0558s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35101012102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             F+ k+y++++d+++++lisw + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +
  SapurV1A.0558s0090.1.p  10 FVLKTYQMVSDPATDSLISWGRANNSFIVVNPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLR 87 
                             9********************999*****************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++i r+k+
  SapurV1A.0558s0090.1.p  88 GQKQLLKSIVRRKH 101
                             ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-50699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEANNIIAPF VLKTYQMVSD PATDSLISWG RANNSFIVVN PLDFSQRILP VYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK QLLKSIVRRK HGPNKGSSCM QVNTKGEDFD  120
GEDIIMEIAR LKQDQKAVEL ELDGMNKRLE ATERRPQQMM AFIYQVVEDP DLLPRMILEK  180
ERTRQIKDKK QRLMISSSAT SSSGMALSGA STIIKSEVAS EEGSVGVISS PETVFDVDKF  240
CQSSPDESNI NAIGWLDHVN YGCAVAGASP SAAGSMGAGI GTTVAVLPQG DSSVIGYGGD  300
WGDHMNYFGE MAAGVEDRPR PSYPFSLLGG GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2479926129Heat shock factor protein 1
5d5v_B1e-2479926129Heat shock factor protein 1
5d5v_D1e-2479926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0558s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140110.0KP014011.1 Populus simonii heat shock transcription factor C1 (HsfC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324418.20.0heat stress transcription factor C-1
SwissprotQ9LV523e-89HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0N7DKH10.0A0A0N7DKH1_9ROSI; Heat shock transcription factor C1
TrEMBLB9ILM20.0B9ILM2_POPTR; Uncharacterized protein
STRINGcassava4.1_010201m1e-151(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-89heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]