PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0557s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 715aa    MW: 78196.5 Da    PI: 6.4357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0557s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14283342155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  SapurV1A.0557s0200.1.p 283 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 342
                             57*******************666664478446**********99*************98 PP
2AP244.15.1e-14385436155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  + g+f t eeAa+a++ a+ k++g
  SapurV1A.0557s0200.1.p 385 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYMGTFSTQEEAAEAYDIAAIKFRG 436
                             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-16283352IPR016177DNA-binding domain
CDDcd000181.57E-21283352No hitNo description
PfamPF008474.1E-11283342IPR001471AP2/ERF domain
SMARTSM003801.6E-28284356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-15284351IPR001471AP2/ERF domain
PROSITE profilePS5103218.861284350IPR001471AP2/ERF domain
PRINTSPR003673.9E-6285296IPR001471AP2/ERF domain
CDDcd000188.75E-24385446No hitNo description
SuperFamilySSF541714.05E-17385446IPR016177DNA-binding domain
PfamPF008472.2E-9385436IPR001471AP2/ERF domain
PROSITE profilePS5103218.755386444IPR001471AP2/ERF domain
SMARTSM003803.5E-32386450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17386445IPR001471AP2/ERF domain
PRINTSPR003673.9E-6426446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MASMNNWLGF SLSHQELPSS QSDHSQNTDS RLGFHSDEIS GTDVSGECFD LTSDSTAPSL  60
NIPATFGILE AFRNNQSQDW NMKSLGMNPD TNYKTASGLP IFMGTSCNSQ NIDQNQEPKL  120
ENFLGGHSFG NHEHKLNGCN AMYDTTGEYV FQNCSLQLPS EATSNERIRS MSGGGENKNS  180
SIGLSMIKTW LRNQPAPTQQ DTNNKNNGGA QSLSLSMSTG SQPAASALPL LAVNGGGNST  240
GGDHSSSSDN NKEQKTTPSL DSQTVAIESV PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH  300
LWDNSCRREG QTRKGRQVYL GGYDKEDKAA RAYDLAALKY WGTTTTTNFP ISNYEKEIEE  360
MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYMGTFSTQ  420
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV SSILESSTLP IGGAAKRLKE AEHAEITMDV  480
VQRTDEHDNL SSQLTDGVGN YGAVHHGWPP AAFQQAQPFS MNYPYGQRLW CKQEQDSDSR  540
SFQEIHQLQL GNTHNFFQPS VLHNLMSMDS SSMEQSSGSN SVMYSSGVND GTSTGTNGGY  600
QGIGYGSNAG YAVPMTTVIS NNDNNQNQGN GYGDGEVKAL GYENMLSSSD PYHARNLYYL  660
SQQSPAGGIK ASAYDQGSAY YNWVPTAVPT VAARSKNMAV CHGAQPFTVW NDGT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0557s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316179.20.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HYI00.0B9HYI0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-145AP2 family protein