PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0554s0220.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 763aa MW: 87486.5 Da PI: 7.0482

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0554s0220.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.1	2.3e-31	80	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r+e +++ +++r+r++tr+gCka+++vkk+++gkw vtkl+++HnHe SapurV1A.0554s0220.1.p 80 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGNEN--RSKRQRTVTRVGCKAQMTVKKQSSGKWAVTKLVKDHNHE 164 9***************************************9988..999********************************** PP FAR1 89 lap 91 ++p SapurV1A.0554s0220.1.p 165 FVP 167 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-28	80	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-29	288	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.633	568	604	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-10	578	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-9	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MVMNMDQLNV IPFDNINMGR EDDPNTALHL QHHQPHNFDF DFDYPNNNDD DLLEPTSLSD 60 PNLDPYEGME FDSEQSARIF YNSYARRVGF STRVSVYQRS RRDGSIICRQ IVCSREGFRR 120 EGNENRSKRQ RTVTRVGCKA QMTVKKQSSG KWAVTKLVKD HNHEFVPPDK VHSLRSHRHV 180 SGSARSLIDT LQAAGMGPSG VMSVLIRESG GINNVGFTKV DCQNYMSNSR QRTLGPGGQA 240 VFDYLKQMQA EDPGFFYAVQ GDFENSTGNV FWADANARMN YSYFGDTITF DTTYRTNRYR 300 VPFAPFTGWN HHGQPLLFGC ALLLNESESS FVWLFETWFA AMSGRCPISI TTDQDRIIRA 360 AVSKAFPGTR HRFCKWNVFR EAQEKLSHVY HSHPTFEPEF HRCINVAESV DEFESCWESL 420 LQRFDLSDNE WLQSMYNARQ QWVPVYLQDT FFGEMSIMQG SDSINSYFDG YINASTNIHN 480 LIKQYEKAMA VRHEKEVKAD YDTLNSPPVL KTPSPMEKQA ANLYTRRIFM KFQEELVETL 540 AYLATVVDDT GSAITYQVAK FGEDHKVHHV RFNAFEKRAS CSCQMFEFSG IICRHILAVF 600 RVKNVLTLPS NYILKRWTRN AKSGVVLDEH TLGLPCNTQE SLAARSENLR QEAIRYVEEG 660 AESEHIYNVA MGALHEAIRK VAAAKKCGSA PVQTTLFNGS EQLQWCSLDE DEKIQELRAE 720 LEQASQRCEA YRTKLLSVMK DMEERKLRIS VKVQNVRLKM KD*

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MVMNMDQLNV IPFDNINMGR EDDPNTALHL QHHQPHNFDF DFDYPNNNDD DLLEPTSLSD  60
PNLDPYEGME FDSEQSARIF YNSYARRVGF STRVSVYQRS RRDGSIICRQ IVCSREGFRR  120
EGNENRSKRQ RTVTRVGCKA QMTVKKQSSG KWAVTKLVKD HNHEFVPPDK VHSLRSHRHV  180
SGSARSLIDT LQAAGMGPSG VMSVLIRESG GINNVGFTKV DCQNYMSNSR QRTLGPGGQA  240
VFDYLKQMQA EDPGFFYAVQ GDFENSTGNV FWADANARMN YSYFGDTITF DTTYRTNRYR  300
VPFAPFTGWN HHGQPLLFGC ALLLNESESS FVWLFETWFA AMSGRCPISI TTDQDRIIRA  360
AVSKAFPGTR HRFCKWNVFR EAQEKLSHVY HSHPTFEPEF HRCINVAESV DEFESCWESL  420
LQRFDLSDNE WLQSMYNARQ QWVPVYLQDT FFGEMSIMQG SDSINSYFDG YINASTNIHN  480
LIKQYEKAMA VRHEKEVKAD YDTLNSPPVL KTPSPMEKQA ANLYTRRIFM KFQEELVETL  540
AYLATVVDDT GSAITYQVAK FGEDHKVHHV RFNAFEKRAS CSCQMFEFSG IICRHILAVF  600
RVKNVLTLPS NYILKRWTRN AKSGVVLDEH TLGLPCNTQE SLAARSENLR QEAIRYVEEG  660
AESEHIYNVA MGALHEAIRK VAAAKKCGSA PVQTTLFNGS EQLQWCSLDE DEKIQELRAE  720
LEQASQRCEA YRTKLLSVMK DMEERKLRIS VKVQNVRLKM KD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0554s0220.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383797.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2AMR1	0.0	A0A2K2AMR1_POPTR; Uncharacterized protein
STRING	POPTR_0005s27900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0554s0220.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]