PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0553s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 308aa    MW: 34153.5 Da    PI: 7.7878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0553s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.6e-1375113646
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             ++E++l+++++++lG++ W++Ia +++ gRt++++ ++w++
  SapurV1A.0553s0090.1.p  75 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEINNYWNT 113
                             79***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.4682364IPR017930Myb domain
SuperFamilySSF466892.23E-2225111IPR009057Homeodomain-like
SMARTSM007172.6E-42766IPR001005SANT/Myb domain
PfamPF002492.8E-62864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-122971IPR009057Homeodomain-like
PROSITE profilePS5129422.24665119IPR017930Myb domain
SMARTSM007171.3E-1069117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2272120IPR009057Homeodomain-like
PfamPF002491.1E-1175113IPR001005SANT/Myb domain
CDDcd001672.45E-975115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRNPSSTTST RSKITVPTPC CSKVGIKKGP WTPEEDELLA NYVKKEAGLA RCGKSCRLRW  60
MNYLRPSVKR GLIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEINNY WNTSLSKKLI  120
SQGIDPRTHR PLKPNPDSSE MANVPVQNRN LKSPPVLDEN GRVFRSVATR VSENFTVPPN  180
LDDQFPSQVA ADATEYWPNR DGFNMGSLQS GYDQGKTDED LIEDIGNEDT LSSFLDSLLN  240
DNVFVYQQRQ QLQQQNMSGL SSKLVVSSSQ ILSHGNIWEA QVSPPMAAFG DKPVGGAPSN  300
IIQCLCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23281197108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0553s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371166.11e-168transcription repressor MYB5
TrEMBLU5FED71e-166U5FED7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05210.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-65myb domain protein 5