PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0552s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 350aa MW: 38635.4 Da PI: 8.2451 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.4 | 2e-34 | 82 | 139 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+ SapurV1A.0552s0010.1.p 82 VITYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPED 139 579***************************9999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-23 | 83 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-28 | 83 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-31 | 84 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.944 | 85 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.79E-19 | 212 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-30 | 212 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-26 | 220 | 277 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDVTPTTATA EAVATATTPT PTNNNTNTTI PKSPDVDTAT PTRIPQSKPL SFTNGFLKRH 60 PPHHHHHHHH HHLFSPPPPP TVITYKECLK NHAATIGGHA LDGCGEFMPS PTATHTDPTS 120 LKCAACGCHR NFHRREPEDF TPHTTAMATI EYQPHHRHHP PPPQAQPQHN RSPNSASPPP 180 ISSSYYPSAP HMLLALSGGV SGLNENVNIN APPPAGSSPR KRFRTKFSQS QKERMHQFAE 240 KVGWKMQKRD EDWVQEFCNE VGVDRSVLKV WMHNNKNNSG KKEHLNGNND EIIRSSNLEN 300 SYSNNESNKN ITNNNNNGTE GLNHNQNHHH FENDSHVAHV GTNGSSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-20 | 221 | 278 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0552s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227236 | 0.0 | CU227236.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU228827 | 0.0 | CU228827.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU229016 | 0.0 | CU229016.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010943.1 | 1e-157 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 4e-73 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2K2ATR0 | 1e-153 | A0A2K2ATR0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s12500.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-68 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0552s0010.1.p |
Publications ? help Back to Top | |||
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