PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0550s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 419aa    MW: 46069.8 Da    PI: 4.625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0550s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.7e-4871351129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             l+pGfrFhPtd elv++yLk+kv gkkl++ ++i+e++i+k+ PwdLp k ++++++ +wyfF++++kkya+g r +rat+ g+Wk+
  SapurV1A.0550s0150.1.p   7 LTPGFRFHPTDVELVKYYLKRKVLGKKLHF-QAIAEIEINKYAPWDLPdKsCLRTGDLKWYFFCPTEKKYASGVRMKRATDIGFWKT 92 
                             579*************************99.89**************96347788999***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             tgkd++v   k+e+vg+ ktLvf++g+ pkg++tdWvmheyrle
  SapurV1A.0550s0150.1.p  93 TGKDRHVQY-KNEDVGMIKTLVFHTGKPPKGSRTDWVMHEYRLE 135
                             ********9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-545157IPR003441NAC domain
PROSITE profilePS5100551.3217157IPR003441NAC domain
PfamPF023659.3E-269134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRNSSLTPG FRFHPTDVEL VKYYLKRKVL GKKLHFQAIA EIEINKYAPW DLPDKSCLRT  60
GDLKWYFFCP TEKKYASGVR MKRATDIGFW KTTGKDRHVQ YKNEDVGMIK TLVFHTGKPP  120
KGSRTDWVMH EYRLEEKELA EKGIAQDGYV LCVLFKKDGP GPKNGAQYGA PFNEDEWDDD  180
EVEEEVNVQL AILPAVMHAH AIMLPTNPNM SIATSSRVSE CTCAGPLISC PSQTPSSACT  240
TLPRVSNDVV ASTESLQVVH GGVNGGEADS SAGMSAPALQ QTCKPNSPIL ASSSSYVPEN  300
TCSAYIPSVS QGEAPQIVDD YDDIFSSLDL LDNVYTEAGF FPPKISFDLI SWAWSADFGG  360
IAEAETDKHW SLGGLAPLED SADSIPISQY FSQYLPGSTA DYLELMDLVT PLYQSREE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-42616316171NO APICAL MERISTEM PROTEIN
1ut4_B3e-42616316171NO APICAL MERISTEM PROTEIN
1ut7_A3e-42616316171NO APICAL MERISTEM PROTEIN
1ut7_B3e-42616316171NO APICAL MERISTEM PROTEIN
3swm_A3e-42616319174NAC domain-containing protein 19
3swm_B3e-42616319174NAC domain-containing protein 19
3swm_C3e-42616319174NAC domain-containing protein 19
3swm_D3e-42616319174NAC domain-containing protein 19
3swp_A3e-42616319174NAC domain-containing protein 19
3swp_B3e-42616319174NAC domain-containing protein 19
3swp_C3e-42616319174NAC domain-containing protein 19
3swp_D3e-42616319174NAC domain-containing protein 19
4dul_A3e-42616316171NAC domain-containing protein 19
4dul_B3e-42616316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0550s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022982.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ9FY821e-88NAC82_ARATH; NAC domain-containing protein 82
TrEMBLB9HEK00.0B9HEK0_POPTR; NAC family protein
STRINGPOPTR_0007s03840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.15e-87NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]