PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0546s0080.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 40382.2 Da PI: 9.6302 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88 | 2.2e-27 | 54 | 136 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq +LG+ ++sk ++WLl + k i++l+ + s SapurV1A.0546s0080.2.p 54 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQHKLGLSQPSKVVDWLLDATKNDIDKLPPLqiplpgygqfhqpvlfshqS 136 78************************************************************955555555444444443331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.093 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-25 | 55 | 117 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MISNPRDKGL RGKQAGGGSS HEAGKISEAT PSISSRQWSA FRNPRIVRVS RTFGGKDRHS 60 KVCTVRGLRD RRIRLSVPTA IQLYDLQHKL GLSQPSKVVD WLLDATKNDI DKLPPLQIPL 120 PGYGQFHQPV LFSHQSNIAS PFFDPNSTFI KDVGFHSLGI KIDTSAADLD GRVQNCSGTG 180 FSRDIEASTR AKDKQAETIT EKGKWIRANE GGGIGSYSAA EQVSAQNFFP LATHSSMPTL 240 LSNTNMPFNS YHWEASNLSL STEFGSHGFQ SQAENSLNSS SSLPLSSGSQ LFFCPPPSMP 300 PLFPSYPPCV NESRDMNHFQ LLSSSSSQHI LPISRAMSSR TKPFSLNLNP GLLHLLNNNE 360 SNPGEDKTGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-17 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-17 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0546s0080.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU282258 | 1e-142 | GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282259 | 1e-142 | GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282260 | 1e-142 | GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence. | |||
GenBank | GU282262 | 1e-142 | GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015070.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Refseq | XP_011015071.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A2K1XIN3 | 0.0 | A0A2K1XIN3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s06980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-48 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0546s0080.2.p |