PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0534s0150.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YA

Protein Properties

Length: 218aa MW: 23826.5 Da PI: 6.8558

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0534s0150.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	42.2	2.7e-13	167	201	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 ++p+YVNaKQy +I++RR++Rak+e +kkl +k+rk SapurV1A.0534s0150.6.p 167 QDPVYVNAKQYPGIIRRREQRAKAEVDKKL-IKARK 201 68***************************9.88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.3E-7	165	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	14.654	166	217	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.3E-10	169	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	171	191	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MQSKPGKTNG LEPNPSDIQE YTVHSEPWWR NIGYSSMPPA MTGGNASNSE GHNDSESNDD 60 QSLSSGRLNE EDADATKDSQ STASSHLGNH GQLHNLQGLV SSMATMHNGL SQSPQFELVS 120 HSIACASNPY QDACYSGMMA YGHHPLGYPQ FVGMPHARML LPLEVAQDPV YVNAKQYPGI 180 IRRREQRAKA EVDKKLIKAR KVNSNRQVGI FCLISFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0534s0150.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464100.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_024464101.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_024464102.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_024464103.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_024464104.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_024464105.1	1e-136	nuclear transcription factor Y subunit A-1 isoform X1
Swissprot	Q9LXV5	3e-49	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2K1Z354	1e-134	A0A2K1Z354_POPTR; Uncharacterized protein
STRING	POPTR_0001s26480.1	1e-115	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	8e-53	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	SapurV1A.0534s0150.6.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]