PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0532s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 248aa MW: 25224.8 Da PI: 8.0702

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0532s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.1	4.8e-41	35	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq SapurV1A.0532s0190.1.p 35 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFSLQQQ 121 7*********************9989******************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+ael++l+++ SapurV1A.0532s0190.1.p 122 VVNLQAELSYLQAH 135 *******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.093	34	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-40	35	133	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSATKTSPIN SGVGGGSSGG GGGGGGGGGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ 60 GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVYG CVAHIFSLQQ 120 QVVNLQAELS YLQAHLAALE VPSPPPPPPP TLVTPPPLSI ADLPSASAIP AAYDLSSLFD 180 PMMQPTWSMQ QQQRQMDIRQ FGGSGGSSGT SGGELQALAR ELLHGRGSPP PGFVPCTDAL 240 ASPSISK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	31	136	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	31	136	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0532s0190.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301295.2	1e-122	LOB domain-containing protein 30
Swissprot	O81323	3e-82	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	B9GPH4	1e-121	B9GPH4_POPTR; LBD family protein
STRING	XP_006491458.1	1e-110	(Citrus sinensis)
STRING	XP_006445237.1	1e-110	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	7e-76	LOB domain-containing protein 18

Link Out ? help Back to Top
Phytozome	SapurV1A.0532s0190.1.p

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]