PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0525s0070.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 464aa MW: 52200.7 Da PI: 8.2825 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 4.9e-19 | 10 | 100 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff ++ s++l+s rl++p +f++ ++gk+ s ++l +sg +W+ l ++ +++++++GW+eFv+++ L+ gD +vF+++g+ SapurV1A.0525s0070.3.p 10 FFVIF--SSNLSSERLRIPVSFIKYMEGKT--SGLVSLLGPSGDVWTADL--NQENEGVLFSNGWSEFVRDHFLECGDLLVFRYHGE 90 56666..99**************5557664..448***************..99999***************************999 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +f v+vf++ SapurV1A.0525s0070.3.p 91 LCF--SVQVFDQ 100 999..9999987 PP | |||||||
2 | B3 | 40.6 | 4.5e-13 | 259 | 348 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++++ +v+ s l +p +f +h +++ ++++l+ +g W+v+ ++ +++l +GW Fv++n++++gD+++F+l+ + SapurV1A.0525s0070.3.p 259 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRIIKGACWSVNSVPtTRVHTSHTLCGGWMAFVRSNEINVGDVCIFELVCK 343 56667778888899*******98996..45889***************954566666799***********************9987 PP SEE..EE CS B3 88 sefelvv 94 ef +v SapurV1A.0525s0070.3.p 344 YEF--RV 348 666..33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-23 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-22 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.48 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.49E-18 | 8 | 99 | No hit | No description |
Pfam | PF02362 | 4.1E-17 | 10 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-17 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-20 | 254 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 254 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-16 | 256 | 349 | No hit | No description |
PROSITE profile | PS50863 | 12.294 | 258 | 354 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 258 | 346 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-7 | 258 | 354 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MVNVIRRPCF FVIFSSNLSS ERLRIPVSFI KYMEGKTSGL VSLLGPSGDV WTADLNQENE 60 GVLFSNGWSE FVRDHFLECG DLLVFRYHGE LCFSVQVFDQ SACEKEAAFH SKCSQGYSEF 120 CGSIGQRRER EEEAASLERD FFCARKKVIE GCSEFHSEYI EKDREAHISA CDVGGRQHDG 180 LLTTEESISR ETNQCGNPAN CFATPSQSTA CSEKREVPIW KRFGKDDDLK LHDRGHVSIF 240 SEREKRVAES FISCFPYFVR IMKRFNVSGS YTLNIPYQFS MAHLPNCRTE IILRIIKGAC 300 WSVNSVPTTR VHTSHTLCGG WMAFVRSNEI NVGDVCIFEL VCKYEFRVFI LRVGKEGPDM 360 ETQKVVSNGE NTGCASTAHK TESFPKKSRR KCLKVHSKLI KKAEICDKKE FKKSQATGIL 420 RHGNATKDSA CAVLCSMSRT GDGKQRKGTD VLIPGLLIKK IPI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0525s0070.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441432.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X1 | ||||
Refseq | XP_024441433.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X1 | ||||
Refseq | XP_024441434.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X1 | ||||
Refseq | XP_024441435.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X2 | ||||
TrEMBL | A0A2K1XQ18 | 0.0 | A0A2K1XQ18_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03610.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0525s0070.3.p |