PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0525s0070.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 507aa    MW: 56929.9 Da    PI: 8.2815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0525s0070.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-1910100199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff ++  s++l+s rl++p +f++ ++gk+  s  ++l  +sg +W+  l  ++  +++++++GW+eFv+++ L+ gD +vF+++g+
  SapurV1A.0525s0070.2.p  10 FFVIF--SSNLSSERLRIPVSFIKYMEGKT--SGLVSLLGPSGDVWTADL--NQENEGVLFSNGWSEFVRDHFLECGDLLVFRYHGE 90 
                             56666..99**************5557664..448***************..99999***************************999 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +f   v+vf++
  SapurV1A.0525s0070.2.p  91 LCF--SVQVFDQ 100
                             999..9999987 PP
2B340.45.2e-13259348294
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             + ++++ +v+ s  l +p +f  +h   +++ ++++l+  +g  W+v+    ++   +++l +GW  Fv++n++++gD+++F+l+ +
  SapurV1A.0525s0070.2.p 259 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRIIKGACWSVNSVPtTRVHTSHTLCGGWMAFVRSNEINVGDVCIFELVCK 343
                             56667778888889*******98996..45889***************954566666799***********************9987 PP

                             SEE..EE CS
                      B3  88 sefelvv 94 
                              ef  +v
  SapurV1A.0525s0070.2.p 344 YEF--RV 348
                             666..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-226103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-227103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.488101IPR003340B3 DNA binding domain
CDDcd100174.16E-18899No hitNo description
SMARTSM010191.6E-1710101IPR003340B3 DNA binding domain
PfamPF023624.8E-1710100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-20254352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-21254353IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-16256349No hitNo description
PROSITE profilePS5086312.294258354IPR003340B3 DNA binding domain
SMARTSM010192.0E-7258354IPR003340B3 DNA binding domain
PfamPF023622.1E-9258346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVNVIRRPCF FVIFSSNLSS ERLRIPVSFI KYMEGKTSGL VSLLGPSGDV WTADLNQENE  60
GVLFSNGWSE FVRDHFLECG DLLVFRYHGE LCFSVQVFDQ SACEKEAAFH SKCSQGYSEF  120
CGSIGQRRER EEEAASLERD FFCARKKVIE GCSEFHSEYI EKDREAHISA CDVGGRQHDG  180
LLTTEESISR ETNQCGNPAN CFATPSQSTA CSEKREVPIW KRFGKDDDLK LHDRGHVSIF  240
SEREKRVAES FISCFPYFVR IMKRFNVSGS YTLNIPYQFS MAHLPNCRTE IILRIIKGAC  300
WSVNSVPTTR VHTSHTLCGG WMAFVRSNEI NVGDVCIFEL VCKYEFRVFI LRVGKEGPDM  360
ETQKVVSNGE NTGCASTAHK TESFPKKSRR KCLKVHSKLI KKAEICDKKE FKKSQATGIL  420
RHGNATKDSA CAVLCSMSRT GDGKQQALLI QNGKGVEAEA GLRRLVALDE ERAAKSFTSG  480
FPNFVRIMRK FNVSGSYTLV SVLLFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0525s0070.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441435.10.0B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLA0A2K1XQ180.0A0A2K1XQ18_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-19B3 family protein