PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0525s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 609aa    MW: 68073.7 Da    PI: 8.2307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0525s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.5e-1910100199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff ++  s++l+s rl++p +f++ ++gk+  s  ++l  +sg +W+  l  ++  +++++++GW+eFv+++ L+ gD +vF+++g+
  SapurV1A.0525s0070.1.p  10 FFVIF--SSNLSSERLRIPVSFIKYMEGKT--SGLVSLLGPSGDVWTADL--NQENEGVLFSNGWSEFVRDHFLECGDLLVFRYHGE 90 
                             56666..99**************5557664..448***************..99999***************************999 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +f   v+vf++
  SapurV1A.0525s0070.1.p  91 LCF--SVQVFDQ 100
                             999..9999987 PP
2B3406.9e-13259348294
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             + ++++ +v+ s  l +p +f  +h   +++ ++++l+  +g  W+v+    ++   +++l +GW  Fv++n++++gD+++F+l+ +
  SapurV1A.0525s0070.1.p 259 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRIIKGACWSVNSVPtTRVHTSHTLCGGWMAFVRSNEINVGDVCIFELVCK 343
                             56667777888889*******98996..45889***************954566666799***********************9987 PP

                             SEE..EE CS
                      B3  88 sefelvv 94 
                              ef  +v
  SapurV1A.0525s0070.1.p 344 YEF--RV 348
                             666..33 PP
3B347.23.9e-15487576496
                             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             ++ + +v+ s  l +p +f +++   ++++++++l++++g+ W v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+g+ +
  SapurV1A.0525s0070.1.p 487 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILRNLQGQCWAVNSLPDSKGRAvHTFCGGWIAFVRDNNIKIGDICMFELVGKCQ 571
                             566667788889********9996..45899****************6655555579999**********************99544 PP

                             E..EEEE CS
                      B3  90 felvvkv 96 
                                +v++
  SapurV1A.0525s0070.1.p 572 M--RVQI 576
                             4..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-226103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-227103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.488101IPR003340B3 DNA binding domain
CDDcd100171.82E-18899No hitNo description
SMARTSM010191.6E-1710101IPR003340B3 DNA binding domain
PfamPF023626.3E-1710100IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-21254353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19254352IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-17256349No hitNo description
PROSITE profilePS5086312.294258354IPR003340B3 DNA binding domain
SMARTSM010192.0E-7258354IPR003340B3 DNA binding domain
PfamPF023622.7E-9258346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-22476577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-22477578IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-17482576No hitNo description
SMARTSM010196.2E-12484580IPR003340B3 DNA binding domain
PfamPF023621.1E-12484575IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774484580IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MVNVIRRPCF FVIFSSNLSS ERLRIPVSFI KYMEGKTSGL VSLLGPSGDV WTADLNQENE  60
GVLFSNGWSE FVRDHFLECG DLLVFRYHGE LCFSVQVFDQ SACEKEAAFH SKCSQGYSEF  120
CGSIGQRRER EEEAASLERD FFCARKKVIE GCSEFHSEYI EKDREAHISA CDVGGRQHDG  180
LLTTEESISR ETNQCGNPAN CFATPSQSTA CSEKREVPIW KRFGKDDDLK LHDRGHVSIF  240
SEREKRVAES FISCFPYFVR IMKRFNVSGS YTLNIPYQFS MAHLPNCRTE IILRIIKGAC  300
WSVNSVPTTR VHTSHTLCGG WMAFVRSNEI NVGDVCIFEL VCKYEFRVFI LRVGKEGPDM  360
ETQKVVSNGE NTGCASTAHK TESFPKKSRR KCLKVHSKLI KKAEICDKKE FKKSQATGIL  420
RHGNATKDSA CAVLCSMSRT GDGKQQALLI QNGKGVEAEA GLRRLVALDE ERAAKSFTSG  480
FPNFVRIMRK FNVSGSYTLK IPHQFSAAYL PNCKTEVILR NLQGQCWAVN SLPDSKGRAV  540
HTFCGGWIAF VRDNNIKIGD ICMFELVGKC QMRVQISGVG HEVANHQIGN PASNDLPLLA  600
VPQNDPAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0525s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441435.10.0B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLA0A2K1XQ180.0A0A2K1XQ18_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-19B3 family protein