PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0525s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 341aa    MW: 37116.5 Da    PI: 8.4947
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0525s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.8e-32135188255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  SapurV1A.0525s0030.1.p 135 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 188
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15133189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28133189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23135188IPR006447Myb domain, plants
PfamPF002492.2E-7136187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MFSSSKQIMR SASPFPDLSL QISPPSLKVK ETGYDGGLTR KALICSDRSS TTDSGSSGSD  60
LSHENGFLNQ EGRYNLGPSE PTLSLGFDVA DLSAQTLQLQ RNLNHHHHHQ PQIYGRDFKR  120
SVRMINGVKR SARAPRMRWT TTLHAHFVHA VQLLGGHERA TPKSVLELMN VKDLTLAHVK  180
SHLQMYRTVK STDKGSGQGL TDMGLSQRAG IHEVDASGLS SGKSDANNLP QPLNINPPPP  240
PPPPSIQKNQ RNSGSSSMEG DEKNRSSLEA LPCSYFEAHD HSKEDGLSAA LHVAANMKGR  300
LDSSSSSSSD MLLNLEFTLG RPSWQLDYAE STNELTLLKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-17136190357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-17136190357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-17136190357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-17136190357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0525s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719900.0KP271990.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-293 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030894.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A2K1XQ131e-176A0A2K1XQ13_POPTR; Uncharacterized protein
STRINGcassava4.1_011255m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-67G2-like family protein