PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bZIP
Protein Properties Length: 380aa    MW: 42622 Da    PI: 8.9578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.42.7e-072342711754
                             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                             A+rsR RK+++i+eLe+ v++L+ae ++   ele  ++
  SapurV1A.0523s0140.1.p 234 AQRSRVRKLQYIAELERNVQVLQAEGSEVSAELEFVNQ 271
                             89***********************9999999886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0024223282IPR004827Basic-leucine zipper domain
CDDcd147032.37E-15225273No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-5234274No hitNo description
SuperFamilySSF579592.6E-5234276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MANSKGSANI RNFMYSGKHS LLPPKSPFPI VSPSYVDYVP SSSIGSKTVQ KPREGNTHHQ  60
RTSSETLFME DQPSWLDDLL NEPETPVRKG GHRRSSSDSF AYIDVANTAQ DGCRNKNLMS  120
IPSWGSQDFD YYKDVRRTPL YAEMNMSKQK NRAWDSSLNV LTYPSGLSSS RENAGLQSSG  180
SSCAPREADS VSDSEKQDPL DGSHDSKISS EKDSSNSKSS ASETDTKRAK QQFAQRSRVR  240
KLQYIAELER NVQVLQAEGS EVSAELEFVN QQKLILSMEN NALKQRFENL ANEQLIKCLE  300
HEVLEREIGR LRSLYQQQQH QQQQPASNHR RSKSKDLDSQ FANLSLKHKD ANSSQYANLS  360
LKHKDANSSR DPVTGSLRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384994.10.0uncharacterized protein At4g06598
SwissprotQ8W3M73e-70Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A2K2AYE70.0A0A2K2AYE7_POPTR; Uncharacterized protein
TrEMBLU5GKB60.0U5GKB6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51232637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-102bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]