PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 124aa    MW: 14487 Da    PI: 10.9142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-127106196
                             EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegD 78 
                             f+k+l++ dv+ +  + +p k ++ +   +gk+ ++++  + d  + grsW+++++   +++  +   vl++ W e+vk +gLkegD
  SapurV1A.0523s0080.1.p   7 FKKKLSKTDVGFR--MAIPMKRFAVFripQGKHFQNFD--FLDmiSAGRSWSFRCSKrtNNS--HpkPVLSSDWIEYVKKKGLKEGD 87 
                             8899988888865..79997776566688667666555..54544899*******8743444..346******************** PP

                             EEEEEE-SS.SEE..EEEE CS
                      B3  79 fvvFkldgr.sefelvvkv 96 
                              v F ++++  e++l ++v
  SapurV1A.0523s0080.1.p  88 EVSFFHVKKdGEERLQFGV 106
                             **99988665777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-14499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-15699No hitNo description
SMARTSM010190.00197107IPR003340B3 DNA binding domain
PfamPF023629.9E-97105IPR003340B3 DNA binding domain
PROSITE profilePS508638.72743110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MYQRLIFKKK LSKTDVGFRM AIPMKRFAVF RIPQGKHFQN FDFLDMISAG RSWSFRCSKR  60
TNNSHPKPVL SSDWIEYVKK KGLKEGDEVS FFHVKKDGEE RLQFGVQALK KLRLWGTDIW  120
AAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455931.12e-40uncharacterized protein LOC18098285
TrEMBLB9PC871e-51B9PC87_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22950.18e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336