PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 114aa    MW: 12924.1 Da    PI: 10.2819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-12684383
                            EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                            k+l++sd  ++  l lp ++++++  g   +++ l+++de+g +W++++++   k+s+  + ++ W+ Fv+ +gLk+gD++v+ 
  SapurV1A.0523s0070.1.p  6 KTLITSDIERR--LLLPENCLKNFpRG---RETFLKIRDEDGIVWTFRCRIppGKHSKPALYGEYWSIFVRKKGLKAGDIIVIV 84
                            78888888765..9*******777533...3456***************9988888888999******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4742108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-14484IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00484108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-12485IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-14583No hitNo description
PfamPF023621.3E-10684IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MKEVTKTLIT SDIERRLLLP ENCLKNFPRG RETFLKIRDE DGIVWTFRCR IPPGKHSKPA  60
LYGEYWSIFV RKKGLKAGDI IVIVFNNVVA PAAGPDGDHF EIKVKKTSPE TRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.12e-30PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG35e-46A0A2K2AYG3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.12e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527