PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0523s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13444.4 Da PI: 6.7844 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.7e-15 | 5 | 89 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f++++++d ++g l++p + + ++ ++ +++ d++g++W++ +++ r+ s +++l+ GW++Fv++ +L++ D v+++ +g SapurV1A.0523s0050.1.p 5 FSKFLTADDIENG-LSIPGCSLGQLPDQEGLTMSMQVHDRNGQVWTFSCTIkRNDSVGHFLSVGWNKFVRERDLRVDDKVTIHEEG 89 4567799999998.********99999999*******************885666666***********************99333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-14 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-12 | 4 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.30E-11 | 5 | 89 | No hit | No description |
Pfam | PF02362 | 7.5E-13 | 6 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MAMVFSKFLT ADDIENGLSI PGCSLGQLPD QEGLTMSMQV HDRNGQVWTF SCTIKRNDSV 60 GHFLSVGWNK FVRERDLRVD DKVTIHEEGM KKQGSGTWIK VEVKRKIRLF GEDIWADV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0523s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002451.1 | 2e-55 | PREDICTED: uncharacterized protein LOC105109425 | ||||
TrEMBL | U7DUM1 | 2e-68 | U7DUM1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0601s00200.1 | 4e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13182 | 5 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 7e-08 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0523s0050.1.p |