PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13827.6 Da    PI: 10.6982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.1e-15696188
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
                            f k l  s + +++rl++p   + ++    g+++  + +  +d++ ++W++kl++r++ +     v+t+ W +Fvk++gL++gD +vF+
  SapurV1A.0523s0030.1.p  6 FTKLL--SPTDTRRRLTIPMANLGDFefpTGQHA--INIEATDTTEQQWTFKLSIRRNNNPnprPVFTGQWIRFVKEKGLRAGDRIVFS 90
                            67777..77788889*******999987755644..568888***********994444444579************************ PP

                            E-SS.S CS
                      B3 84 ldgr.s 88
                            +++   
  SapurV1A.0523s0030.1.p 91 RQQAeG 96
                            875533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-18395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.2344108IPR003340B3 DNA binding domain
CDDcd100171.57E-145107No hitNo description
SuperFamilySSF1019367.59E-15592IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-11697IPR003340B3 DNA binding domain
SMARTSM010193.7E-46109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEQQLFTKLL SPTDTRRRLT IPMANLGDFE FPTGQHAINI EATDTTEQQW TFKLSIRRNN  60
NPNPRPVFTG QWIRFVKEKG LRAGDRIVFS RQQAEGDGEQ YRIRAERKIF NYWVNVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.13e-64PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH54e-62A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.11e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.15e-09related to ABI3/VP1 1