PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0523s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 108aa MW: 12746.5 Da PI: 11.5024 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.2 | 1.7e-14 | 6 | 93 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 f k l v +++rl++p ++++ g+ + + ++ +d++ ++W ++l++r++ + v+t+ W++Fv+++gL++gD +v+ SapurV1A.0523s0020.1.p 6 FTKLL--RPVDTRHRLTIPMAILRDFefpAGQ--NAINIVATDTTEQQWIFRLSIRRNNNPnprPVFTGQWNRFVEEKGLRAGDRIVIF 90 55666..7889999************988555..4568***************994444444579*******************66544 PP E-S CS B3 84 ldg 86 +++ SapurV1A.0523s0020.1.p 91 RQQ 93 333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-18 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.996 | 4 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.23E-15 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-12 | 6 | 107 | No hit | No description |
SMART | SM01019 | 0.0035 | 6 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 6 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MEQHWFTKLL RPVDTRHRLT IPMAILRDFE FPAGQNAINI VATDTTEQQW IFRLSIRRNN 60 NPNPRPVFTG QWNRFVEEKG LRAGDRIVIF RQQAEGDGVQ YRIRVER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0523s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 1e-47 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2K2AYH5 | 7e-49 | A0A2K2AYH5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 2e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 4e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0523s0020.1.p |