PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0523s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14416.4 Da PI: 6.2584 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.4 | 1.4e-14 | 5 | 86 | 2 | 83 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 f++++++d ++g l++p + + ++ ++ +++ d++g+ W++ +++ r+ s +++l+ GW++Fv++ +L++ D v+++ SapurV1A.0523s0010.1.p 5 FSKFLTADDIENG-LSIPGCSLGQLPDQEGLTMSMQVHDRNGQDWTFSCTIkRNDSVGHFLSVGWNKFVRERDLRVDDKVTIH 86 4567799999998.********99999999*******************885666666***********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-13 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-11 | 4 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.42E-10 | 5 | 86 | No hit | No description |
Pfam | PF02362 | 1.8E-12 | 6 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MAMVFSKFLT ADDIENGLSI PGCSLGQLPD QEGLTMSMQV HDRNGQDWTF SCTIKRNDSV 60 GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KKEGSGTWIK VEVKRKIRLF GEDIWADVQA 120 IDKVGTK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0523s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002451.1 | 9e-57 | PREDICTED: uncharacterized protein LOC105109425 | ||||
TrEMBL | U7DUM1 | 3e-69 | U7DUM1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0601s00200.1 | 4e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13182 | 5 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 2e-06 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0523s0010.1.p |