PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0518s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 1611aa    MW: 178706 Da    PI: 6.1549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0518s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001614981522223
                              EET..TTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2    2 kCp..dCgksFsrksnLkrHirt.H 23  
                              kC+   C +sF +k +L+ H r+ +
  SapurV1A.0518s0230.1.p 1498 KCNleGCRMSFDTKAELQLHKRNrC 1522
                              79999****************9877 PP
2zf-C2H2110.001315211544223
                              EET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                              +C+   Cgk Fs++ +  +H+r+H
  SapurV1A.0518s0230.1.p 1521 RCTyeGCGKKFSSHKYAIVHQRVH 1544
                              588889****************99 PP
3zf-C2H211.50.0009215801606123
                              EEET..TTTEEESSHHHHHHHHHH..T CS
                 zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                              y+C+   Cg sF+  s++ rH r+  H
  SapurV1A.0518s0230.1.p 1580 YQCKveGCGLSFRFVSDFSRHRRKtgH 1606
                              99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6891657IPR003349JmjN domain
PfamPF023751.5E-141750IPR003349JmjN domain
SMARTSM005588.7E-46287456IPR003347JmjC domain
SuperFamilySSF511971.1E-25287453No hitNo description
PROSITE profilePS5118433.91290456IPR003347JmjC domain
PfamPF023732.4E-35320439IPR003347JmjC domain
SMARTSM003551514971519IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.90515201549IPR007087Zinc finger, C2H2
SMARTSM003550.08715201544IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.23E-515201557No hitNo description
Gene3DG3DSA:3.30.160.602.6E-515211548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015221544IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-1015491574IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.88415501579IPR007087Zinc finger, C2H2
SMARTSM003550.001815501574IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015521574IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-1015601602No hitNo description
Gene3DG3DSA:3.30.160.601.9E-1115751603IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.47315801610IPR007087Zinc finger, C2H2
SMARTSM003550.2315801606IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015821606IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1611 aa     Download sequence    Send to blast
MGNVEIPEWI KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKRYV  60
FSNLNKALSK CPELGDDVDL SNGGLRYSGN DGEDRAVFTT RQLELGQSAK KAKGVDKENP  120
QSGVHKQVWQ SGEVYTLEQF ESKSKAFARS LLGMIKEVNP LAVEALFWKA ASEKPIYVEY  180
ANDVPGSGFG EPEGHFRYFR RRRRKRASYQ SYRRSRESPV CRENDMDGVK NSHDDDVTVK  240
SEPSMCLKMT PRSSMASATP SAEDSLKSSK QKSVAASNDM EGTAGWKLSN SPWNLQVIAR  300
SPGSLTRFMP DDIPGVTSPM VYIGMLFSWF AWHVEDHELH SMNFLHIGSP KTWYSVPGDY  360
VFAFEEVIRT KAYGGNIDRL AALSLLGEKT TLLSPEAIIS SGIPCCRLVQ NPGEFVVTFP  420
RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNY LPMLSHQQLL YLLTMSFVSR  480
VPRSLLPGAR SSRLRDRQRE ERELSVKKAF LEDMLKENDV LSAFLEKKST CHVVIWNPDL  540
LPCASKESQL PSITSTITTS SNENASHNHS DLNTNSNEND LFKEMSLYME TLNDLYMEDD  600
LSCDFQVDSG TLACVACGIL GFPFMSVIQP SERALIELAP GDYLLAQEEP VVARSDNVQP  660
SSNPHTSVKG SISDERAPVS DPSVSLKDLP VPTGWNPSRK FSRPRIFCLE HGVQIEELLQ  720
SKGGANMLII CHSDYQKIKA HASAIAEEIE NPFNYNEIPL EAASQGNLNL INLAIDDEDH  780
HECGEDWTSK LGINLQYCVK IRKNSPTKKV QHALALGGLF SDRSLSSDFL NIKWQSRRSR  840
SRIKINQSLN CKPCKIIETK KDELLGNKSD GLTVKKEEKL IQYTRRKYKV KIDYSTNGLR  900
RCSRRCLAEE VSGAGGYDPD KHTEQTTVIY PCDTGIAGSG SAAFGFSPIE ESEMLHEVQV  960
LEAASGLTLN SAPSQVAGSI LTSTVAVESV VGQIEQIEDQ LQEESNTERN VCNVKASGSS  1020
EIEHGISALG GTRERQDFCT KKCSRCSPSV TAANERYEMQ IEDQIMGNVN IVSETCDLVS  1080
KGQQRILDDD ASMHKVSDLP SSANLHVSHL PVAQMVNVEN SSIDNEVSPP VTLDNEVQRE  1140
TETKSSSRDD TLMDQPRTTL DERCDHEQET CAAENKMQQE TEITNGSNEE LVLSDVISGP  1200
NIVPVDESSE FHREPHAAVN MCDGMAFESG EQLVFLTTND SNKELTSCSG TQMEINPSTV  1260
SSGFSKLHWQ DSAENDLCSG STLGSVVPLE IPNTDISTVE ELKNQVLAEA SREICVIQDS  1320
NSCMDLEPEV KQEIHSNDGV IGDSEAQKIH ESKSSINKDR PVSTCVILVN QRTPSPVKKC  1380
SNIEDKSCGE SVLKCNEASL EIASIESVVV DSRSNAGKGR KRKSEVEQLT ENKLNSNGFI  1440
RSPCEGLRPR AVKDATCKSE VDVGKSAEEN PVTKRSRKPS DASIPRPKRK EITKRSLKCN  1500
LEGCRMSFDT KAELQLHKRN RCTYEGCGKK FSSHKYAIVH QRVHEDNRPL KCPWKGCSMS  1560
FKWAWARIEH IRVHTGEKPY QCKVEGCGLS FRFVSDFSRH RRKTGHYTPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-56266470133346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-56266470133346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205RRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0518s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378772.20.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A3N7FNR90.0A0A3N7FNR9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]