PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0517s0240.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 848aa MW: 94245.2 Da PI: 6.841 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.2 | 6.4e-23 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++ SapurV1A.0517s0240.1.p 157 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHENEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFI 242 99*****************************7333.34459********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++el+v+v+r+ SapurV1A.0517s0240.1.p 243 FL--RGENGELRVGVRRA 258 **..449999*****996 PP | |||||||
2 | Auxin_resp | 120 | 1.9e-39 | 283 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW++SkWr+Lk SapurV1A.0517s0240.1.p 283 AWHAVSTGTLFTVYYKPRTSPAEFIVPFDQYMESTKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPSRWKDSKWRCLK 365 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-40 | 153 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-41 | 154 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.71E-21 | 155 | 257 | No hit | No description |
SMART | SM01019 | 1.1E-22 | 157 | 259 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.321 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-21 | 157 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-36 | 283 | 365 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.9E-10 | 713 | 806 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.13E-11 | 716 | 798 | No hit | No description |
PROSITE profile | PS51745 | 24.965 | 721 | 805 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MASSEISAKA NSGNIKGGGE SFSSGYSETM EGQKGHSTHP SSARDAETTL YKELWHACAG 60 PLVTVPREGD HVFYFPQGHL EQVEASTNQV ADQQMPVYNL PPKILCRVVN VQLKAEPDTD 120 EVFAQVTLHP LQNQDENASE KEHPPPPPPP RFHVHSFCKT LTASDTSTHG GFSVLRRHAD 180 ECLPPLDMSR QPPTQELVAK DLHENEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA 240 FIFLRGENGE LRVGVRRAMR QQSNVPSSVI SSHSMHLGVL ATAWHAVSTG TLFTVYYKPR 300 TSPAEFIVPF DQYMESTKNN YSIGMRFKMR FEGEEAPEQR FTGTIVGIED ADPSRWKDSK 360 WRCLKVRWDE TSTIPRPDRV SPWKIEPALA PPALNPLPMP RPKRPRANMV PSSPDSSVLT 420 REGSSKVTAD PSSTSRFSRV LRGQEFSTVR GNFAESNESD AAEKSVIWPP SADDEKIDVL 480 SSSRRFGSER WMSSARQEPT YTDLLSGFGA NADSSHGFGA PFVDRTAGSD QGQFNLLANP 540 WSIMSSGLSL KLSESNTRVP VQGSSDETTY QAIPNIRCSA FSEYPMLHGQ RVEQSHGSSM 600 MPPPPSHFDN HACTRELMPK PQLVQEHDNR KSLDGNCKLF GIPLKISKPA SPEQSGPTNM 660 VNEPTGHTPP ASHQITSESD QKSEHSRGSK LADENENEKP FQVGLMRTRD NHGIAQNSST 720 RSCTKVHKQG IALGRSVDLT RFNNYDELIA ELDRLFEFNG ELLAPQKNWL IVYTDDEDDM 780 MLVGDDPWRE FVRMVRKIVI YTREEVQKIK PGTLNSKGNE NPSGVEGGDA KEAKHRPATS 840 ASSPLNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 50 | 387 | 19 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 50 | 387 | 19 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 50 | 387 | 19 | 354 | Auxin response factor 1 |
4ldx_A | 1e-177 | 50 | 387 | 19 | 354 | Auxin response factor 1 |
4ldx_B | 1e-177 | 50 | 387 | 19 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0517s0240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318767.2 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | B9I3Y9 | 0.0 | B9I3Y9_POPTR; Auxin response factor | ||||
STRING | POPTR_0012s10790.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0517s0240.1.p |