PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0516s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 356aa    MW: 40038.4 Da    PI: 9.6679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0516s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30261319360
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                             D + WrKYGqK++kgs++prsYY+C+s  gCp++k+vers edp+++++ Yeg+Hnh+k
  SapurV1A.0516s0090.1.p 261 DDHYWRKYGQKPIKGSPYPRSYYKCSSLrGCPARKQVERSWEDPTMLVVSYEGDHNHSK 319
                             8899**********************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-15219257IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-31249319IPR003657WRKY domain
PROSITE profilePS5081128.61254320IPR003657WRKY domain
SuperFamilySSF1182904.58E-26257318IPR003657WRKY domain
SMARTSM007741.3E-34259319IPR003657WRKY domain
PfamPF031063.4E-25261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKEASGVCVS LSPRRDFRVL EVAQSSFRQA HHLFSCISDQ NQKISIQEVS LIAQDTVNEF  60
RSLVRLLDES ERSECKRIRK TRLLDGSEQS ECKRIRKGPL PHSYDINPVE LMDSPNSVPK  120
SPDHNFSQPN RQLFPLQTIQ STTSLIHANG INLCREKQKN EDSVDVRPNF ILGSNLSPLQ  180
PSTSFSSLDG GARMIHHSAP EVLPSQDDSS IFSKSRRAMK SEEKCLASTG GCHCSKRRKL  240
RIKKVIKVPA LSTKLADIPP DDHYWRKYGQ KPIKGSPYPR SYYKCSSLRG CPARKQVERS  300
WEDPTMLVVS YEGDHNHSKI AFQSPSPDIC FIFDNKSKPK DARIFQAGTD RAPAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-192553171071WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0516s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774420.0GQ377442.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018279.10.0PREDICTED: probable WRKY transcription factor 17 isoform X1
RefseqXP_011018280.10.0PREDICTED: probable WRKY transcription factor 17 isoform X2
TrEMBLA0A3Q9EDY60.0A0A3Q9EDY6_POPTO; WRKY DNA-binding protein 11
STRINGPOPTR_0001s00350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-41WRKY DNA-binding protein 21