PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0515s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 324aa MW: 34818.4 Da PI: 6.605

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0515s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.5	4.7e-36	30	83	2	55
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 +e+a+kcprC+s ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg SapurV1A.0515s0120.1.p 30 QEQASKCPRCESPNTKFCYYNNYSLAQPRHFCKTCRRYWTKGGALRNVPIGGGY 83 57899***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-23	29	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	32	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.729	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MVPPVDLQET SKDDNQSSTS NRKTATTRPQ EQASKCPRCE SPNTKFCYYN NYSLAQPRHF 60 CKTCRRYWTK GGALRNVPIG GGYSTGSLEI SGFNFFHGLS PTVDFNLGGL SLPRLNPSQN 120 GLYSHFPSFG DTSAAAVTVT SPCFSLDPSV SSTAGSCSLM GLNYPLTSVT NRFCNAIQEN 180 IGGGSMNVNT NLPSSIESLS CINQDLHWKL QQQRLAMLYG TGENHKDGST VSTDPIDQSL 240 GHKPQPIMFE NLEISKPQVC AAGNPGKEGA ASGDTATEWF FGNSYSQVTA TPTNASNNGN 300 NDNTGNWNGV QAWGDLHQYS VLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0515s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM466868	2e-38	AM466868.2 Vitis vinifera contig VV78X015400.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380583.2	1e-179	dof zinc finger protein DOF5.7
TrEMBL	A0A2K1ZPY2	1e-178	A0A2K1ZPY2_POPTR; Uncharacterized protein
STRING	POPTR_0005s19310.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	2e-54	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0515s0120.1.p