PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0513s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 657aa    MW: 72119.9 Da    PI: 7.041
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0513s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.2e-16320379155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.0513s0060.1.p 320 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 379
                             78*******************988886678446*************************98 PP
2AP246.59.4e-15422473155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0513s0060.1.p 422 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 473
                             57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-16320389IPR016177DNA-binding domain
PfamPF008471.6E-12320379IPR001471AP2/ERF domain
CDDcd000186.66E-22320387No hitNo description
Gene3DG3DSA:3.30.730.105.8E-16321388IPR001471AP2/ERF domain
PROSITE profilePS5103219.137321387IPR001471AP2/ERF domain
SMARTSM003809.6E-29321393IPR001471AP2/ERF domain
PRINTSPR003675.9E-6322333IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-17422482IPR016177DNA-binding domain
PfamPF008471.4E-9422473IPR001471AP2/ERF domain
CDDcd000186.55E-25422483No hitNo description
PROSITE profilePS5103218.953423481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18423481IPR001471AP2/ERF domain
SMARTSM003803.1E-34423487IPR001471AP2/ERF domain
PRINTSPR003675.9E-6463483IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MKSMSNDSNG SSNNWLGFSL SPHMKMEVDS DLQHHNQYHH QTQTQNQTHA AAAVPTSFYL  60
STSLFNSSEI CYGVEENGGF QYSPLSVMPL KSDGSLCIME ALTRSQPEGM VSSPSPKLED  120
FLGGATMGSH QYGSHEREAM ALSLDSVYYQ QSSEPETNRQ HSLYRQQDQQ FSVQTHPYDS  180
GMACQGLYQA SLEGETKGTQ LADCNSPIPQ MADDELPCLK NWVARHYSSQ NALEQQINSG  240
TADDGGASCS ASAMGCGDLH SLSLSMSPGS QSSCIAAPRQ ISPAGTECVA IETKKRGPVK  300
VGQKQPAHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY  360
DMEEKAARAY DLAALKYWGS STHINFPLEN YQGELEEMKN MSRQEYVAHL RRKSSGFSRG  420
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF  480
KITRYDVDRI MASNTLLAGE LARRNQEAVS STEANHYQNN GVLYQSPQEQ PNVCGESLDQ  540
KSMSVGNYRS TSFSVAVQDL MGMDHSVSSS QPVADESTKL GTHLSNPSSL VTSLSSSREA  600
SPDKTGTPML FAKPPLASKF IGPTTNVTPW IQASAQLRPP AISMAHLPVF AAWNDT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0513s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456512.10.0uncharacterized protein LOC7476433
TrEMBLA0A2K2AH020.0A0A2K2AH02_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein