PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0512s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 528aa    MW: 57379.8 Da    PI: 8.1834
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0512s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.3e-144886241
                     TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                            ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e
  SapurV1A.0512s0130.1.p 48 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNIE 86
                            89**************************.********976 PP
2TCR51.12.7e-16132171140
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                             k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  SapurV1A.0512s0130.1.p 132 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 171
                             589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-154787IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.60548172IPR005172CRC domain
PfamPF036387.3E-114984IPR005172CRC domain
SMARTSM011148.4E-20132173IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.9E-13135170IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MKRSCKNVIP CYCICFPFSI GEDISVDRKP ESPKSRPNAE LKDGTPKKQK QCNCKHSRCL  60
KLYCECFASG TYCDGCNCVN CYNNIENEAA RREAVEATLE RNPNAFRPKI ASSPHGTRDS  120
REETGEGLVF VKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSEERQALF  180
HGDHGNNMAY IQQAANAAIT GAIGSSGYAS LPVSRKRKGQ ELFFGKTVKD PSFHRLGHFQ  240
QASHIRHAAL SSLLPSNPVA CAGNTTTLGS SKITYRSLLA DIIQSQDLKE LCSVLVVLSG  300
EVAKTLSDQR NSTKKRVEDQ GDTFPDSSTQ ERLQSQKEFD ADKIVSNRSS ANHADEGAPD  360
DCSLDSADMP KGRPMSPGTL ALMCDEQDTI FMAAASPNGL MGYGCNSSSQ LPCRQGMTEA  420
HAEQERIVLT KFRDCLNRLI TFGEIKETKC SSLARTELGN EKGPPSKGIA NTRTGTGSQQ  480
GPFSNGVVKV PPAAKPPQMV TSIVATSSSD LQKFQSLPQN GDNKLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-33391811132Protein lin-54 homolog
5fd3_B4e-33391811132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0512s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142821e-179AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012707.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_011012708.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K2A3580.0A0A2K2A358_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein