PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0512s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 461aa MW: 49851.7 Da PI: 7.5893 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 250 | 305 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SapurV1A.0512s0010.1.p 250 KARRCWSPDLHRRFVNALHLLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 305 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.485 | 247 | 307 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.41E-17 | 247 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-28 | 248 | 308 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-26 | 250 | 305 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-7 | 252 | 303 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MSSSPSQVSQ LGRKPHSYSM LLRSFADQND QTPKLEEFIS RLEEERIKID AFKRELPLCM 60 QLLTSAVETS RKQLQACRGN EGPIPVLEEF IPLKTSTSET PEMTANISDK ASWMTTAQLW 120 SQDSIGTKPQ TTLSSPKQTD IGFNVSSKLV LDTKQRNGGA FLPFSKERNM CPGPTLALAA 180 CTDEQLGLDH KKFPETENGF SCPNRESCGN KMAVIEQGKG GGNSSSSDGQ ETNAATIASA 240 NTSTSQTHRK ARRCWSPDLH RRFVNALHLL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ 300 KYRLHTRRPS PSPQAAGAPA PHLVVLGGIW VPPEYATAAS AAHSGGATLY GAHPASHAPP 360 PLFCAPPPAS QDFFTAVAAP PPPLHDQTLR HQLQLFKPTS QVPSSPESDF KGSRDRSESI 420 EDGKSESSSW KGESGENDGG ERKGRAALRE EGEESNGSKF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-14 | 250 | 303 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-14 | 250 | 303 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-14 | 250 | 303 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-14 | 250 | 303 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-14 | 250 | 303 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0512s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308314.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-115 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | B9H993 | 0.0 | B9H993_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s16000.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 8e-94 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0512s0010.1.p |
Publications ? help Back to Top | |||
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