PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0510s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 369aa MW: 40113 Da PI: 7.2345 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 27.1 | 1.3e-08 | 32 | 107 | 21 | 89 |
TCP 21 RvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 + ++a c ++ L eLG+ + + +i+WL+ a p +++ +++++s+ ++++ s++++s++ + SapurV1A.0510s0020.1.p 32 HIMIPAMCSTAIYRLRGELGLSSCGAAIQWLIHHARPHLVPAPEPPTKTKSSKtCPSRKTDSVDHDSIPkptcmaR 107 5778**************************************9995555533335777777777777774444442 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.110.10 | 6.0E-50 | 128 | 340 | IPR003010 | Carbon-nitrogen hydrolase |
SuperFamily | SSF56317 | 2.09E-47 | 128 | 341 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 29.127 | 128 | 368 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 7.2E-39 | 129 | 340 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE pattern | PS00920 | 0 | 161 | 176 | IPR000132 | Nitrilase/cyanide hydratase, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MEESTKYVEA KQVKKRKHRP LIVAQSPAEK IHIMIPAMCS TAIYRLRGEL GLSSCGAAIQ 60 WLIHHARPHL VPAPEPPTKT KSSKTCPSRK TDSVDHDSIP KPTCMAREDV DAPVSDFPVT 120 SPAARLPVRA TVVQASTVFF DTPTTLAEKA EKLIAGAAAY GSQLVVFPEA FVGGYPRCVR 180 FDATNLTEED DSLQRYYASA IDVPGPEVGR LAKIDGKYKV HLVMGVVERA GFYLYSTMLF 240 FDSQGQHLGQ HCKITLVASE SAVWYSGGKS TLLIYETSIG KIGGLTCWDN KWPLLRTELY 300 DKGVEIFCAP TADPGEIWKT SMTHIALEGG CFVLYANQFS LDAITCAGDL GDIILASTQP 360 GRINSSVN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 2e-27 | 128 | 336 | 16 | 227 | Nitrilase |
3wuy_B | 2e-27 | 128 | 336 | 16 | 227 | Nitrilase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 10 | 16 | KQVKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0510s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU285280 | 8e-38 | GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285281 | 8e-38 | GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285282 | 8e-38 | GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285283 | 8e-38 | GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285284 | 8e-38 | GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285285 | 8e-38 | GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285286 | 8e-38 | GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285287 | 8e-38 | GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285288 | 8e-38 | GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285289 | 8e-38 | GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285290 | 8e-38 | GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285291 | 8e-38 | GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285292 | 8e-38 | GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285293 | 8e-38 | GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285294 | 8e-38 | GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285295 | 8e-38 | GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285296 | 8e-38 | GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285297 | 8e-38 | GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285298 | 8e-38 | GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285299 | 8e-38 | GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459261.1 | 0.0 | bifunctional nitrilase/nitrile hydratase NIT4B isoform X1 | ||||
Swissprot | Q42966 | 2e-90 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A2K2A5G6 | 0.0 | A0A2K2A5G6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22420.1 | 1e-146 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17896 | 3 | 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0510s0020.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|