PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0508s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 272aa    MW: 31232.4 Da    PI: 7.4246
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0508s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19e-36251172103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgFkkv +++         weF++++F+k
  SapurV1A.0508s0260.1.p  25 FLTKTYQLVDDPLTDHVVSWGEDETTFVVWRPPEFARDLLPNYFKHSNFSSFVRQLNTYGFKKVVTDR---------WEFANEYFRK 102
                             9*****************************************************************99.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g k+ll++i+r+k++
  SapurV1A.0508s0260.1.p 103 GAKQLLSEIHRRKTS 117
                             ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5521114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFTVDRCEE MVFAMESQKA VPTPFLTKTY QLVDDPLTDH VVSWGEDETT FVVWRPPEFA  60
RDLLPNYFKH SNFSSFVRQL NTYGFKKVVT DRWEFANEYF RKGAKQLLSE IHRRKTSQHH  120
HQHYPDQATQ FLQPEDCAGW IDPPFPSPKP SADILTALSE DNQRLRRKNC VLLSELSHMK  180
NLYNEIIYFI QNHVKPVPHE QKAHINTVPK LVEPAGSSGQ DRTICFGVQR AKNGVLGKHS  240
LTFSTEESSS PLKLFGVPLV DNKRLHPEAI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-211511711123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0508s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140100.0KP014010.1 Populus simonii heat shock transcription factor B4c (HsfB4c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314009.10.0heat stress transcription factor B-4d
SwissprotQ9C6351e-84HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9HNI51e-179B9HNI5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07220.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-87heat shock transcription factor B4