PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0505s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21331.9 Da PI: 9.1336 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F + + L H + H SapurV1A.0505s0070.1.p 23 YMCSHCDREFESGHALSGHYKAH 45 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-5 | 21 | 53 | No hit | No description |
PROSITE profile | PS50157 | 12.092 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MMEKDSETSS DEETVTSTLR SRYMCSHCDR EFESGHALSG HYKAHSNKRK RKCMPGSVAE 60 PPVAPRNGSW LTHGAPTLAV QSGVKYETGY GSSSTRPQGG IKKDIELKIE AHRSHPYERD 120 VKKEAPRGGR LLNIMTLTHV VKINRRVDTD LARTVTNPVA EVSRKENGDT KLTSGKNGDE 180 DLDLELRLGF GPA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0505s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005305.1 | 7e-96 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | B9HA03 | 8e-93 | B9HA03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s20940.1 | 1e-93 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16552 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0505s0070.1.p |