PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0500s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | VOZ | ||||||||
Protein Properties | Length: 467aa MW: 51545.6 Da PI: 4.9838 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 447.8 | 1.2e-137 | 210 | 426 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatak 87 pppsaf+gpkcalwdctrpaqg+ew++dycssfhatlalneg+pg++pvlrp+gi+lkd+llf+al+ak+qgk+vgip+cegaa +k SapurV1A.0500s0280.1.p 210 PPPSAFMGPKCALWDCTRPAQGAEWCEDYCSSFHATLALNEGPPGMSPVLRPRGINLKDNLLFDALTAKMQGKNVGIPQCEGAAVMK 296 89************************************************************************************* PP VOZ 88 spwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyei 174 spwnaaelfdlsllegetirewlffdkprraf+sgnrkqrslpdysgrgwhesrkqvmke+gg+k+syymdpqp++++ewhlyeyei SapurV1A.0500s0280.1.p 297 SPWNAAELFDLSLLEGETIREWLFFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKELGGKKKSYYMDPQPPGCHEWHLYEYEI 383 *************************************************************************************** PP VOZ 175 neldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 n++da+alyrlelkl+ +kk++kgkvskdsl+dlqkk+grlta SapurV1A.0500s0280.1.p 384 NNCDACALYRLELKLAGGKKTPKGKVSKDSLVDLQKKMGRLTA 426 *****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MQRGGKSKCA STSHHLLMDN AKSRLNDLQE RFFNIQAARE EGRNNDVALL EEQVCQSLRE 60 WKAELDVPSP ANSLLDISLG SFSEDIGRLL QLCEEEDDAT SPLTMQTVLK LETQPEPNFQ 120 NLNLGNLTTF QDEYLVNSHS QEVGFQGFHQ HNSSSGLQSV AVSGPDITTL LDCHQFTLDE 180 EFDPGLFVGT NDTKECGINA ESNNLQYISP PPSAFMGPKC ALWDCTRPAQ GAEWCEDYCS 240 SFHATLALNE GPPGMSPVLR PRGINLKDNL LFDALTAKMQ GKNVGIPQCE GAAVMKSPWN 300 AAELFDLSLL EGETIREWLF FDKPRRAFDS GNRKQRSLPD YSGRGWHESR KQVMKELGGK 360 KKSYYMDPQP PGCHEWHLYE YEINNCDACA LYRLELKLAG GKKTPKGKVS KDSLVDLQKK 420 MGRLTAVVTA DNSPSDKGKT NADTEVGSVD FGSAQDQKTS GTGHGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0500s0280.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213156 | 0.0 | AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002326034.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_024447611.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-175 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | B9IQS1 | 0.0 | B9IQS1_POPTR; VOZ family protein | ||||
STRING | POPTR_0019s12260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-177 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0500s0280.1.p |
Publications ? help Back to Top | |||
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