PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0494s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 36016.2 Da PI: 5.3396 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 85 | 133 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++ ++g SapurV1A.0494s0080.1.p 85 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARIIRG 133 9*******.**********954...4*******************99988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.0E-38 | 84 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-32 | 84 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 84 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 84 | 142 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 85 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-32 | 85 | 142 | No hit | No description |
PRINTS | PR00367 | 8.4E-12 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-12 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MCGGAILAEI IPRNRARREA ASEFWPNATF NKLSPFDSFL SPLSNQEESF TLKRPRPQPQ 60 PQPRPISETA QVEKPNAKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA 120 ARAYDREARI IRGKKAKVNF PNEDEHNYTY QNSKTKPPMY PAPTCHFSKG YDFGYGSGMN 180 QIESYSSNGF NGQPIVTSGD DSGSTSEEGT RLVDCNHNLE SDVYMGQVKL EMEEEKLEKV 240 KNKEVVLVDL ETGMEENEVQ KLTEELIAYE NYMKFYQIPY LDGQSMAPNG STQENLVGNL 300 WNFDDDSVAP PITSAPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 85 | 143 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 56 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0494s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009990.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
TrEMBL | B9GSD4 | 0.0 | B9GSD4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s20270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-29 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0494s0080.1.p |