PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0487s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 266aa    MW: 30040.6 Da    PI: 6.2842
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0487s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-193191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++q+++L+el++    r p+ +e+++++++l    +++ ++V++WFqN++a+e++
  SapurV1A.0487s0060.1.p 31 TRWTPTTDQIRILKELYYIkgVRSPNGAEIQQISTRLrkygKIEGKNVFYWFQNHKARERQ 91
                            8****************95469*************************************97 PP
2Wus_type_Homeobox110.78.2e-362993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRWtPt++Qi+iL+ely+ +G+r+Pn +eiq+i+++L++yGkie+kNVfyWFQN+kaRerqk+
  SapurV1A.0487s0060.1.p 29 TSTRWTPTTDQIRILKELYYiKGVRSPNGAEIQQISTRLRKYGKIEGKNVFYWFQNHKARERQKK 93
                            789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-112695IPR009057Homeodomain-like
PROSITE profilePS5007110.0582692IPR001356Homeobox domain
SMARTSM003893.0E-42896IPR001356Homeobox domain
PfamPF000461.3E-163191IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-63191IPR009057Homeodomain-like
CDDcd000869.57E-63193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEPQQQQNQQ HPNEDNNGGA KGNFICRQTS TRWTPTTDQI RILKELYYIK GVRSPNGAEI  60
QQISTRLRKY GKIEGKNVFY WFQNHKARER QKKRFTNDVP TQQRTTLKPE DYYSYKYSSS  120
NNNPGFSSAS SNAGAVTVGQ TDNYGYGSVT MQEKKNWECS VPAGGSNGAE GESMSNINYG  180
SRVGINPYSS SSYTVFDQDL EAAEKIETLP LFPMHGEDIN TSFNNINPDF YYSSWYGSDD  240
YGNATSSRTS LELSLYSYNG QQQDY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0487s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9826980.0KF982698.1 Populus tomentosa WUSa (WUSa) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383114.11e-162protein WUSCHEL
SwissprotQ8LL117e-61WUS_PETHY; Protein WUSCHEL
TrEMBLW8P7661e-162W8P766_POPTO; WUSa
STRINGPOPTR_0005s11680.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-38WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]