PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0484s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 425aa    MW: 45998.5 Da    PI: 5.1564
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0484s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.2e-06234335
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                            e +C+ ++ +++  +C+ ++  lC  C    H 
  SapurV1A.0484s0180.1.p  2 ESVCDFCGVEKAVVYCKPDSAKLCFRCDGRVHA 34
                            579*****999****************988884 PP
2CCT48.62.8e-17370411144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             R++a++RY+eK+ktR   K+irY+sRKa+A++R+RvKGrFvk+ 
  SapurV1A.0484s0180.1.p 370 RDKAKMRYNEKKKTRT--KQIRYASRKARADTRKRVKGRFVKAG 411
                             899************5..***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.015147IPR000315B-box-type zinc finger
CDDcd000214.75E-4447No hitNo description
PROSITE profilePS5101711.042368410IPR010402CCT domain
PfamPF062032.4E-12370410IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESVCDFCGV EKAVVYCKPD SAKLCFRCDG RVHAANFLSR SHPRSLLCDK CSSLPAVARC  60
LDEKLSICQG CDCSANGCSS SGHRLRALNC YTGCHSSAEF SKIWSSVLVG SSSGGFDSGW  120
DSLNSAPIDE NCISSCLEQR VNEGSFGLVT ENLNESKLEP WRGPPTIITP NPNYMPCCRD  180
QVPMFPEVTN LPQQGCSIFK DIGLPDDEDL CDGLNLDDIP LDFENSDEIF SCSGTQNKYQ  240
FGDAGKDCML MQKNLSVTGS NGPIENAIEV SSSGQLECVA FQSSCVSGPA SAMQAISGNA  300
NCSIFTNPSC SRNLNLGFSG QVHSSMSLPL SNIIGESSSP DYQDCGLSPL FLSGESPWES  360
HLDASSPQAR DKAKMRYNEK KKTRTKQIRY ASRKARADTR KRVKGRFVKA GEAYDYDPLL  420
SSNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380386KKTRTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0484s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134170.0AC213417.1 Populus trichocarpa clone POP018-J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460898.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_024460899.10.0putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A3N7FCZ80.0A0A3N7FCZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-86B-box type zinc finger protein with CCT domain