PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0484s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 112aa MW: 12623.7 Da PI: 9.1204

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0484s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.5	1.5e-10	39	96	35	90
EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +d++gr+W +kl+ r ++ + v+++ W ++v+++gLk+gDf++++++++ +++ SapurV1A.0484s0050.1.p 39 YFNARDPTGRVWVFKLCTRFGPHKkPVIRGDWLRYVREKGLKVGDFIILTMVEDaENG 96 466789********8855555559**********************88775544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-10	8	94	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.93E-11	8	92	No hit	No description
SuperFamily	SSF101936	4.12E-11	34	95	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-7	40	95	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.557	43	105	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MEIKLVNKQL TTYDIASCLA YPASTLGAFQ MVQGQNAIYF NARDPTGRVW VFKLCTRFGP 60 HKKPVIRGDW LRYVREKGLK VGDFIILTMV EDAENGVSYN IRVEPNLELA L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0484s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003253.1	1e-51	PREDICTED: uncharacterized protein LOC105110050
TrEMBL	B9HE55	5e-56	B9HE55_POPTR; Uncharacterized protein
STRING	POPTR_0007s02840.1	8e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14473	3	13

Link Out ? help Back to Top
Phytozome	SapurV1A.0484s0050.1.p