PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0484s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 14583.1 Da PI: 10.3934 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.1e-11 | 53 | 114 | 32 | 90 |
--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + + +d++gr+W++kl+ r++++ v ++ W ++v+a+gL ++Df++++++++ ++ SapurV1A.0484s0030.1.p 53 NAINFNARDPTGRVWKFKLCTRNHGRYkkPVVRGDWLKYVRAKGLTVNDFIILTMVEDaNGV 114 45567889***********987776657799***********************98874554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-11 | 24 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-12 | 27 | 110 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-10 | 27 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-8 | 54 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MVCENYGDFI KDLKEKFTGV EIVLVNKKLT KTDIASCLAY PTGRAIQMLR GRNAINFNAR 60 DPTGRVWKFK LCTRNHGRYK KPVVRGDWLK YVRAKGLTVN DFIILTMVED ANGVSYSIRV 120 EPSLKLAI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0484s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003253.1 | 3e-51 | PREDICTED: uncharacterized protein LOC105110050 | ||||
TrEMBL | B9HE55 | 2e-54 | B9HE55_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02840.1 | 3e-55 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14473 | 3 | 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0484s0030.1.p |