PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0480s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 476aa    MW: 52132.5 Da    PI: 7.499
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0480s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.58.1e-11216236222
                             --SS-EEEEEEE--TT-SS-E CS
                    WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                             +DgynWrKYGqK+ kgsefpr
  SapurV1A.0480s0150.1.p 216 KDGYNWRKYGQKHLKGSEFPR 236
                             8*******************9 PP
2WRKY106.81.1e-33368426159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a dp++v++tYeg+Hnh+
  SapurV1A.0480s0150.1.p 368 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCKVRKHVERAAADPEAVITTYEGKHNHD 426
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-10208259IPR003657WRKY domain
PROSITE profilePS5081110.2210236IPR003657WRKY domain
SuperFamilySSF1182907.45E-12214259IPR003657WRKY domain
SMARTSM007741.1E-15215258IPR003657WRKY domain
PfamPF031061.3E-6216236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36353428IPR003657WRKY domain
SuperFamilySSF1182901.31E-29360428IPR003657WRKY domain
PROSITE profilePS5081137.987363428IPR003657WRKY domain
SMARTSM007742.6E-39368427IPR003657WRKY domain
PfamPF031061.9E-26369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDGNGKEHQQ PKQQQPPSPS KPLPSRPTTI TLPPRSFTET FFSSGPGTMG FSPGPMTLLS  60
SFFSDSDDCK SFSQLLAGAI SSPNSKPPDD FSRPSNLTIA PPAPMFPMPL GLSPVFLPDS  120
PGFGLFSPQG FGMTHQQALA QVTAQAAQAN SIMHVQPEYS TPEISSTFTN NSAAHQQQQM  180
VRSVADSGVK IQELSDFSQP DQRPESSSLA VDKPAKDGYN WRKYGQKHLK GSEFPRIERS  240
LDGQVTEIIY KGQHNHQPPQ SNKRGKDTGG LNGNPNSQGS SELASRFQSG SGNVSEVRER  300
KDQESSQATP EHVSGMSDSE EAGGEIDEDE PDPKRRTTEV RATETASSHR TVTEPRIILQ  360
TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTAGCK VRKHVERAAA DPEAVITTYE  420
GKHNHDVPEA KNSSHNTVNR NASHLKPQTL EKHASNNRNS QQPVARLRLK EEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-41359428877Probable WRKY transcription factor 4
2lex_A4e-41359428877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0480s0150.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012596.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-151WRKY4_ARATH; Probable WRKY transcription factor 4
SwissprotQ9ZQ701e-151WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1X9J0V10.0A0A1X9J0V1_POPTO; WRKY transcription factor 3 family protein
STRINGPOPTR_0010s17040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-126WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]