PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0470s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 567aa MW: 59807.4 Da PI: 7.2498 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.5 | 1.6e-40 | 155 | 261 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ i+++tgt++++a+++ ++s +ss+s++++ SapurV1A.0470s0110.1.p 155 APAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAETTIIAATGTGTIPANFStLNVSLRSSGSTHTA 241 899******************************************************************999777777777773333 PP TCP 88 gkaaksaakskksqksaasalnlakes 114 + +sk++++s +sal l+++ SapurV1A.0470s0110.1.p 242 P-------PSKSAPHSFHSALGLSHHP 261 3.......5555555555555555544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-36 | 160 | 282 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.924 | 161 | 215 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 567 aa Download sequence Send to blast |
MELSNSQSNK ENNTTQESHH HHHRHHLQQQ LSFDHGRSSS GGGGGGPSHG PFMGSISIQA 60 GLHHHHNLGA SSSTPTTVNT GSVPSPSSSP LSSSSSSTSA STSSTTPPRL VDASLAIATS 120 YDPSLLDSTN KNQQNLSITP AATNSTGAAT AAAPAPAKRS TKDRHTKVDG RGRRIRMPAT 180 CAARVFQLTR ELGHKSDGET IEWLLQQAET TIIAATGTGT IPANFSTLNV SLRSSGSTHT 240 APPSKSAPHS FHSALGLSHH PHYEEGFAHP AFLGFHQQQQ QHLITADQIA QALPIGADVG 300 GSGGESRGGG EENYMRKRFR EDLFKEDNPQ EQGESGGGGG GGEGPPIKAF KSDLQQPKPQ 360 QQETGSSGLL RSSNILPTTA MWAMAPAPPS SGAGNTFWML PMSAGAGGGP PLATATSVSC 420 PSSEPQIWPF ATATPASGNP LQAPLHFVPR FNLPTTNLEF QRGRGSPLQL GSMSPLQLGS 480 MLMQQQQQQH HQQQQPSQHL GLGMPESNLG MLAALNNAYS RGDLNMNSQQ NNPLDHHHHH 540 RHQQQQQQQQ TQGTADSGDE DPNSSQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0470s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028314.1 | 0.0 | PREDICTED: transcription factor TCP8-like | ||||
TrEMBL | A0A2K2AYJ2 | 0.0 | A0A2K2AYJ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-47 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0470s0110.1.p |