PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0470s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13439.3 Da PI: 4.9835 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.4 | 3.3e-10 | 11 | 90 | 9 | 84 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 + ++rl +p ++++++++ +++ + +e ++ ++W+++l++r+ + v+t+ W +Fv+++gL++gD + + + SapurV1A.0470s0050.1.p 11 RTDIECRLAFPTASLRAFSMPE-GETAVYFEATDTleKEWNFRLSIRGENDPytkPVITGDWLQFVRDKGLRVGDKINLWR 90 4555699********9997775.55688888877777*******9855544444689******************887764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.13E-14 | 7 | 93 | No hit | No description |
SuperFamily | SSF101936 | 3.4E-11 | 7 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEVLMEKELS RTDIECRLAF PTASLRAFSM PEGETAVYFE ATDTLEKEWN FRLSIRGEND 60 PYTKPVITGD WLQFVRDKGL RVGDKINLWR EEGVTGVRYS VRAERKIFGF WVNVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0470s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028527.1 | 8e-38 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A3N7G753 | 1e-63 | A0A3N7G753_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23010.1 | 5e-38 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11016 | 3 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-06 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0470s0050.1.p |