PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0467s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 348aa    MW: 38433.2 Da    PI: 8.2451
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0467s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.81.5e-3481137459
             ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                             ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  SapurV1A.0467s0010.1.p  81 ITYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPED 137
                             79***************************9999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2381134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2881135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3182134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.94483134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-19210279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-30210280IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-26218275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDVTPTTATA EAVATATTPT NNNTNTTIPK SPDVDTATPT RIPQSKPLSF TNGFLKRHPP  60
HHHHHHHHHH LFSPPPPPPV ITYKECLKNH AATIGGHALD GCGEFMPSPT ATHTDPTSLK  120
CAACGCHRNF HRREPEDFTP HTTAMATIEY QPHHRHHPPP PQAQPQHNRS PNSASPPPIS  180
SSYYPSAPHM LLALSGGVSG LNENVNINAP PPAGSSPRKR FRTKFSQSQK ERMHQFAEKV  240
GWKMQKRDED WVQEFCNEVG VDRSVLKVWM HNNKNNSGKK EHLNGNNDEI IRSSNLENSY  300
SNNESNKNIT NNNNNGTEGL NHNQNHHHFE NDSHVAHVGT NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202192761875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0467s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2272360.0CU227236.1 Populus EST from severe drought-stressed leaves.
GenBankCU2288270.0CU228827.1 Populus EST from severe drought-stressed leaves.
GenBankCU2290160.0CU229016.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305381.31e-156zinc-finger homeodomain protein 9
RefseqXP_011010943.11e-156PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-73ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2K2ATR01e-155A0A2K2ATR0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12500.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-68homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]