PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0462s0100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 214aa MW: 23303.3 Da PI: 6.3061 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.5 | 3.5e-34 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerF++av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl SapurV1A.0462s0100.2.p 38 KPRLRWTADLHERFIDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.669 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-33 | 35 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-17 | 37 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 40 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-27 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MYSAIHSLPL DGHGDFQASL DGINLSGDAC LVLTTDPKPR LRWTADLHER FIDAVTQLGG 60 PDKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGKQSCKES TDNSKDVGIA PSVAESQDTG 120 SSTSASSGMI AQDLNDGHQV TEALRVQMEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE 180 KACKALDDQA VATAGLEAAR EELSELAIKV SNE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0462s0100.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF146817 | 0.0 | EF146817.1 Populus trichocarpa clone WS01214_H04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323774.2 | 1e-150 | protein PHR1-LIKE 3 | ||||
Swissprot | Q94A57 | 1e-120 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A9PEQ8 | 1e-149 | A9PEQ8_POPTR; Uncharacterized protein | ||||
STRING | XP_002518104.1 | 1e-132 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-106 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0462s0100.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|