PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0458s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 321aa    MW: 35726.3 Da    PI: 7.3073
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0458s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.6e-311771155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++ Ltl+h+kSHLQkYRl
  SapurV1A.0458s0100.1.p 17 KPRLKWTQELHQRFVEAVNQLGGADKATPKSLKRAMEIPELTLYHLKSHLQKYRL 71
                            79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.431474IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-291574IPR009057Homeodomain-like
SuperFamilySSF466891.63E-161674IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-231771IPR006447Myb domain, plants
PfamPF002495.7E-71970IPR001005SANT/Myb domain
PfamPF143799.0E-22123170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGLHRQNMNL VLSTDAKPRL KWTQELHQRF VEAVNQLGGA DKATPKSLKR AMEIPELTLY  60
HLKSHLQKYR LWKSQQSLIS IENNQEDAKE IQSSDDHFQE SAVIQSSRGI CSDGNQHPIN  120
GSFQIAQALQ MQMEVKKKIH EQIEVQRHLQ LRIEAQGKYL QSVLKKAQET LAGYNSYSIG  180
VELAKAELSR LVSMANSGCP SSSISELTET GGSSLRDMAQ MRSAVCSMES SLTSSESSGR  240
KEDMQQKNEI HDTYKSYTAS VELPLMDIHP QDSPVNTCSS NQGKKRNGSI ICDGVFVEQP  300
LASRLRNGDQ LSLGMFDLNS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-171670155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0458s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2306111e-101CU230611.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013317.10.0PREDICTED: uncharacterized protein LOC105117364
SwissprotF4I2743e-84PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2K1ZE560.0A0A2K1ZE56_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-85G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]