PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0453s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 179aa    MW: 19981.4 Da    PI: 9.7135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0453s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-33102160159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+++r ++d+ +v +tYeg+H h+
  SapurV1A.0453s0020.1.p 102 LDDGYRWRKYGQKAVKNSKFPRSYYRCTHQGCNVKKQIQRLTQDEGIVLTTYEGTHSHQ 160
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-3487160IPR003657WRKY domain
SuperFamilySSF1182903.4E-2994161IPR003657WRKY domain
PROSITE profilePS508112997162IPR003657WRKY domain
SMARTSM007747.3E-38102161IPR003657WRKY domain
PfamPF031062.6E-26103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MENYTLFLPL SSSTTTSASP MSSNMAPNSY GFPDLEGAKG NGFLGLMQEM EAPAASLSVD  60
DSSQNRGSVG SESEGKLEKK RGGKKIRKPK HAFQTRSQAD ILDDGYRWRK YGQKAVKNSK  120
FPRSYYRCTH QGCNVKKQIQ RLTQDEGIVL TTYEGTHSHQ IEKSTDNFEH ILRQMHIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2692161776Probable WRKY transcription factor 4
2lex_A2e-2692161776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0453s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036106.11e-100PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A2K2BT198e-99A0A2K2BT19_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16750.15e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.12e-51WRKY DNA-binding protein 75