PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0444s0180.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 371aa    MW: 40506.7 Da    PI: 9.0368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0444s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05628123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y C+ C+k F r  nL+ H r H
  SapurV1A.0444s0180.2.p  6 YICEVCHKGFQRDQNLQLHKRGH 28
                            89******************988 PP
2zf-C2H214.10.0001482104123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k++  +s+ k H + +
  SapurV1A.0444s0180.2.p  82 WRCEKCSKRYAVQSDWKAHTKIC 104
                             58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-5528No hitNo description
PROSITE profilePS5015710.699628IPR007087Zinc finger, C2H2
SMARTSM003550.038628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551904777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-577102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHKRGHNL PWKLKQRQNT QVKKRVYVCP EPTCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWRCEKCSKR YAVQSDWKAH TKICGTREYR CDCGTSFSRK  120
DSFVTNRAFC DALAEENYKV NQNLPATGGM LQNQTQEPFS SSMRSSDACS NKSAVMILTV  180
SPDNSDSALR PLSLNSSGMT VSSNLNPRNP LPLACFSSLV GSNTSPMAIG SNYTPATALL  240
QKAAVMGAKI SDNSIAPILF KGFNGYSTTS MNSSGSFQEG SSKDGSNKGS HGANMNGLYL  300
RDAEMFDRNL IESPLLMDIE NGNAAHTLAG EAYMGGSEKM TNDFLGVEPP TGHSAVGSKR  360
NYEANMMGLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3178141366Zinc finger protein JACKDAW
5b3h_F1e-3178141366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0444s0180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448903.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ65e-91IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2K1R5L60.0A0A2K1R5L6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12770.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-93indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]