PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0444s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 434aa    MW: 47242 Da    PI: 8.8032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0444s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-056991123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y C+ C+k F r  nL+ H r H
  SapurV1A.0444s0180.1.p 69 YICEVCHKGFQRDQNLQLHKRGH 91
                            89******************988 PP
2zf-C2H213.80.00017145167123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k++  +s+ k H + +
  SapurV1A.0444s0180.1.p 145 WRCEKCSKRYAVQSDWKAHTKIC 167
                             58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.5E-56891No hitNo description
Gene3DG3DSA:3.30.160.601.2E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0386991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6996991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355190110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.5E-5140165No hitNo description
SMARTSM00355130145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSNFVQEFED EQFQSAGGSQ HSVGRPNPTE NGGSTPTISK KKRNLPGNPD PDAEVVALSP  60
RTLMATNRYI CEVCHKGFQR DQNLQLHKRG HNLPWKLKQR QNTQVKKRVY VCPEPTCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWRCEKC SKRYAVQSDW KAHTKICGTR EYRCDCGTSF  180
SRKDSFVTNR AFCDALAEEN YKVNQNLPAT GGMLQNQTQE PFSSSMRSSD ACSNKSAVMI  240
LTVSPDNSDS ALRPLSLNSS GMTVSSNLNP RNPLPLACFS SLVGSNTSPM AIGSNYTPAT  300
ALLQKAAVMG AKISDNSIAP ILFKGFNGYS TTSMNSSGSF QEGSSKDGSN KGSHGANMNG  360
LYLRDAEMFD RNLIESPLLM DIENGNAAHT LAGEAYMGGS EKMTNDFLGV EPPTGHSAVG  420
SKRNYEANMM GLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-31141204366Zinc finger protein JACKDAW
5b3h_F2e-31141204366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0444s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448903.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-107IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FEG20.0A0A3N7FEG2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]