PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0439s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 474aa    MW: 51481.5 Da    PI: 7.3264
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0439s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29.2e-1890174186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                             +W++  + +L+ea++e+ ++l++g+l++ +Weev+++++erg    ++s +qCk+k++nl+kryk + ++ ++  s+  s++ +f++
  SapurV1A.0439s0120.1.p  90 EWSDMAISCLLEAYTEKYNQLNKGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKVELQRIGG--SG--SSWNWFKH 172
                             5*************************************8887645578*****************99999987..34..46*****9 PP

                trihelix  85 le 86 
                             +e
  SapurV1A.0439s0120.1.p 173 IE 174
                             98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2288176No hitNo description
Gene3DG3DSA:3.40.1160.109.7E-70227466IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.657229467IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.32E-56230466IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.96E-107232467No hitNo description
PfamPF006962.0E-23233446IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MATDDFPLID EPPPHPPMRH PDATSVTTTG DYHYSDHDKS AATPSSKRNQ QNHHHYDNNN  60
NNNNNKRSKS NSITEIESSD YRDYRKDREE WSDMAISCLL EAYTEKYNQL NKGNLRGRDW  120
EEVAEAVSER GGSNNKKSVE QCKNKIDNLK KRYKVELQRI GGSGSSWNWF KHIEAIMGNA  180
CNGKSGGGGE SDGGGSGGNA NAMSKQVKRY TSGTAAFANT LKIKPVPDLK WRRVVFKISG  240
STLAGNCQNI DPEVAMQIAR EVATASRGGL EIAIVLGGRN FFCADSWISA TGLERPTAYQ  300
ISMMATVMNS ILLQSALEKH GVKARVQSAF AMPELAEPYS RQRAIRHLEK GRVVIFGGVG  360
AGAGAGAGNP LFTTDTEAAL RASEINADAL LKGTNVDGVY DCHAGNNNVI LDHISFREVV  420
SRGVTSMDMM SITYCEENGI PVVIFNLLEP GNISRALCGD QVGTLIDQAG RTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A9e-6423146650279Uridylate kinase
3nwy_B9e-6423146650279Uridylate kinase
3nwy_C9e-6423146650279Uridylate kinase
3nwy_D9e-6423146650279Uridylate kinase
3nwy_E9e-6423146650279Uridylate kinase
3nwy_F9e-6423146650279Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0439s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010401.10.0PREDICTED: uncharacterized protein LOC105115258
SwissprotQ3AV983e-72PYRH_SYNS9; Uridylate kinase
TrEMBLA0A1I9W0C80.0A0A1I9W0C8_POPTO; Aspartate/glutamate/uridylate kinase family protein
STRINGPOPTR_0008s02730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-152Trihelix family protein