PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0432s0150.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 650aa MW: 71427.1 Da PI: 6.3312 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3e-09 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + SapurV1A.0432s0150.2.p 390 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 427 554459******************************88 PP | |||||||
2 | BELL | 127.7 | 4e-41 | 252 | 323 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+r+kqy++q+q+v+ssF+++ g+gsakpYt+lAl++iSrhFrcL+dai++qi SapurV1A.0432s0150.2.p 252 ERQELQNKLTKLLSMLDEVDRRFKQYYHQMQIVVSSFDVISGCGSAKPYTALALQTISRHFRCLRDAITGQI 323 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-64 | 176 | 321 | IPR006563 | POX domain |
Pfam | PF07526 | 3.7E-51 | 182 | 320 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.08E-13 | 371 | 432 | No hit | No description |
SMART | SM00389 | 8.3E-10 | 371 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-17 | 372 | 438 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 374 | 437 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.4E-18 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 650 aa Download sequence Send to blast |
MATYYTSSNN QRDGAAMVYL PGSYPDAPVL PGSMMMYMNS GSYPDNLAGN SHQQNNCIEF 60 QSVENSDSTP QQQEILSNLG GSRIGEHDFG AWRDGRNEML VVHSVNGVSS VLNGAQSLQG 120 QGLSLSLGTQ IQSGIQMPSI SYRNTNSGLT SFLSPNSSFT GNHDVNKGDL SPYGMNSIAR 180 TIPNSKYLKV AQQLLDEVVN VRRALNQPDK EKNQTTSEHG LNSAKDGDSE SKNGASNLQE 240 STNPPSELSH AERQELQNKL TKLLSMLDEV DRRFKQYYHQ MQIVVSSFDV ISGCGSAKPY 300 TALALQTISR HFRCLRDAIT GQIHATRKSL GEQEASENLK GVGITRLRYV DQHLRHQRAL 360 HQLGMMQQHA WRPQRGLPES SVSVLRAWLF EHFLHPYPKD SDKIMLARQT GLTRSQVSNW 420 FINARVRLWK PMVEEMYKEE LGDAEMDSNS SSENAAKETK GDMGTSEDRV EEFQQSASST 480 ATERCTAGQL MDPKSDHVPD MKMAGSTTRS NFQNGTRGEA FTEYGLLKLR EDQRPSMDDC 540 SLFSDAMVHS EGGGDRFIAA AAAAYQMSEV GRFGNGSGVS LTLGLQHCEG GNLPMSGTTH 600 HGFVSMRGDD DIYNAASSVG AGATDFECLN PGNRQHRFSS SHVFHDFVA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0432s0150.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT028861 | 1e-174 | CT028861.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454646.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A2K2AVE8 | 0.0 | A0A2K2AVE8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s16660.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-144 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0432s0150.2.p |